基因组步移技术克隆稀有鮈鲫角蛋白18基因序列及序列分析
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上海市教育委员会重点学科建设项目(J50701)


Cloning and analysis of keratin 18 gene from fish (carp) Gobiocypris rarus
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    摘要:

    角蛋白18是角蛋白的一种,属于S型角蛋白,是在哺乳动物和两栖类动物胚胎发育中第一个表达的中间纤维蛋白。根据已发表的人、爪蟾及斑马鱼角蛋白18 DNA序列,通过DNAman同源性比较获得保守序列,并从中设计二对引物。从稀有鮈鲫基因组中PCR扩增得到2 779 bp的角蛋白18的DNA序列片段;通过基因组步移,分别获得该基因的上游和下游序列片段;最后将获得的全基因片段克隆至质粒载体pMD19T进行序列测定检验。结果显示所克隆的稀有鮈鲫角蛋白18基因全长3 765 bp。对该基因进行NCBI的Blastn同源性比较分析,表明稀有鲫同斑马鱼比较角蛋白18 DNA序列存在73.6%同源相似性;同时对该基因进行生物学分析,开放阅读框(Open Reading Frame,ORF)预测表明稀有鮈鲫角蛋白18是含有7个外显子和6个内含子,共编码367个氨基酸的蛋白质。

    Abstract:

    Cytokeratin 18 (K18) is an ‘S’ keratin and is the first of the intermediate filament proteins to be expressed during mammalian and amphibian development. According to the published conserved DNA sequences of keratin 18 from human, xenopus and zebrafish ,two pairs of primers were designed to obtain 2 779 bp of keratin 18 gene derived from the genome DNA of Gobiocypris rarus by PCR. And then through the genome walking upstream and downstream sequences were also amplified. And then the full amplified fragment of keratin 18 was inserted into Escherichia coli cloning vector pMD19T and sequenced. The result indicated that the keratin 18 of Gobiocypris rarus was successfully obtained about 3 765 bp. The analysis of NCBI's blastn showed that comparing Gobiocypris rarus with zebrafish ,the keratin 18 DNA sequence was highly conserved with 73.6% similarity. Finally, biologically analysis and ORF prediction showed that the keratin 18 DNA sequence contained 7 exons and 6 introns, and coded for a protein with 367 amino acids.

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叶 莹,蔡生力,刘 红.基因组步移技术克隆稀有鮈鲫角蛋白18基因序列及序列分析[J].上海海洋大学学报,2011,20(5):661-668.
YE Ying, CAI Sheng-li, LIU Hong. Cloning and analysis of keratin 18 gene from fish (carp) Gobiocypris rarus[J]. Journal of Shanghai Ocean University,2011,20(5):661-668.

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