鮰鱼SCYA107基因序列的比较分析
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S917

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上海市教委重点学科项目(Y1101);农业部“948”项目(2004-Z44)


Homologue analysis of chemokine gene SCYA 107 between lctalurus punctatus and lctalurus furcatus
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    摘要:

    筛选BAC基因组文库得到阳性克隆后,利用引物步移法测定斑点叉尾鮰SCYA107基因组序列。该基因由四个外显子和三个内含子组成;外显子拼接的序列与cDNA序列完全一致,编码96个氨基酸,在N端含有两个相邻的半胱氨酸(CC)和两个不相邻的半胱氨酸,为典型的CC趋化因子亚家族成员;其上游调控序列有一些与免疫相关的转录因子结合位点;斑点叉尾鲴SCYA107氨基酸的结构和功能与小鼠趋化因子CCL20比较接近,而蓝叉尾鲴则更接近人CCL8,它们氨基酸序列的差别是由于斑点叉尾鲴SCYA107基因序列中多了ACAAA这5个核苷酸,导致读码框移位提前出现终止子TGA所造成的。

    Abstract:

    The positive BAC clones were identified through screening BAC DNA library of channel catfish(Ictalurus punctatus).Positive clone 006_I13 was partial sequenced using primer-walking stratagem,and 2557 bp-length DNA sequence containing SCYA 107 gene was analysed.SCYA 107 gene consisted of 4 exons and 3 introns.The sequence which spliced into 4 exons was completely same with the SCYA 107 cDNA sequence published before,which encodes 96 amino acids.It is typical one member of chemokine CC subfamily based on owning a CC and two separate cysteines at the N-terminal of amino acid.The upstream of SCYA 126 gene contained some immune-related transcription factor binding sites.There exists a big difference between SCYA 107 proteins of channel catfish and blue catfish.The SCYA 107 protein of channel catfish falls into the scope of mouse chemokine CCL 20,however,the SCYA 107 protein of blue catfish is much closer to human CCL 8.The big difference between the two catfishes results from an insertion with five-bp length of nucleotide ACAAA in channel catfish SCYA 107 gene,which leads to ORF shift.

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鲍宝龙 李建忠 李家乐 刘占江.鮰鱼SCYA107基因序列的比较分析[J].上海海洋大学学报,2006,(4):385-389.
BAO Bao-long, LI Jian-zhong, LI Jia-le, LIU Zhan-jiang. Homologue analysis of chemokine gene SCYA 107 between lctalurus punctatus and lctalurus furcatus[J]. Journal of Shanghai Ocean University,2006,(4):385-389.

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  • 收稿日期:2006-02-14
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