基于环境DNA多重PCR技术的大薸入侵监测引物开发与验证
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Q178.1

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国家重点研发计划(2022YFC2601301);临港新片区海洋生物医药科技创新型平台(RWS-2025-004)


Development and validation of primers for monitoring the invasion of water lettuce (Pistia stratiotes L.) using environmental DNA based multiplex PCR technology
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    摘要:

    大薸(Pistia stratiotes L.)作为我国淡水生态系统中危害严重的外来入侵植物,其快速扩散已对水域生态安全构成重大威胁。为实现该物种的早期监测与防控,基于环境DNA(eDNA)技术开发了一套高灵敏度、高特异性的检测体系。通过整合k-mer索引策略与叶绿体基因组比对分析,设计出4组大薸特异性多重PCR引物(PS_7、PS_8、PS_9、PS_10),实验验证结果表明:(1)各单引物及其组合在组织样本、养殖水样和自然水样中均能高效扩增目标DNA;(2)单个引物PS_7和PS_10的检测限均达0.69 ×10-2 ng/μL;PS_8和PS_9的检测限分别为0.34×10-1 ng/μL和0.17 ng/μL;多重PCR体系的检测限达1.1×10-5 ng/μL,较最佳单引物灵敏度提升约625倍(P<0.01);(3)特异性测试显示,该引物组与紫萍(Spirodela polyrhiza)等近缘物种无交叉反应。该多重PCR体系可在3 h内完成检测分析。本研究建立的检测体系为大薸入侵的早期预警与监测提供了可靠技术支撑,并为水生入侵植物的eDNA快速检测方法开发提供了实践范例。

    Abstract:

    Pistia stratiotes L. (water lettuce), as a highly detrimental invasive plant species in China's freshwater ecosystems, has posed significant threats to aquatic ecological security through its rapid proliferation. To enable early monitoring and control of this species, this study developed a highly sensitive and specific detection system based on environmental DNA (eDNA) technology. By integrating k-mer indexing strategies with chloroplast genome alignment analysis, we designed four sets of species-specific multiplex PCR primers (PS_7, PS_8, PS_9, PS_10). Experimental validation demonstrated that: (1) All individual primers and their combinations effectively amplified target DNA from tissue samples, aquaculture water, and natural water samples; (2) The detection limits reached 0.69×10-2 ng/μL for individual primers PS_7 and PS_10, 0.34×10-1 ng/μL for PS_8, and 0.17 ng/μL for PS_9. The multiplex PCR system achieved a detection limit of 1.1×10-5 ng/μL, representing approximately a 625-fold improvement in sensitivity compared to the best single primer (P<0.01); (3) Specificity tests confirmed no cross-reactivity with closely related species such as Spirodela polyrhiza. The entire detection process can be completed within 3 hours. This established detection system provides reliable technical support for early warning and monitoring of Pistia stratiotes invasions, while serving as a practical model for developing rapid eDNA-based detection methods for aquatic invasive plants.

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陈雨萱,陆亮,方敏瑶,李晨虹.基于环境DNA多重PCR技术的大薸入侵监测引物开发与验证[J].上海海洋大学学报,2025,34(5):968-977.
CHEN Yuxuan, LU Liang, FANG Minyao, LI Chenhong. Development and validation of primers for monitoring the invasion of water lettuce (Pistia stratiotes L.) using environmental DNA based multiplex PCR technology[J]. Journal of Shanghai Ocean University,2025,34(5):968-977.

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  • 收稿日期:2025-08-16
  • 最后修改日期:2025-08-21
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  • 在线发布日期: 2025-09-25
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